JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2A14_chr7_144118176_144136188	0/0	a0008	310	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A1_chr7_144307419_144327737	0/0	a0001	310	60	11	12	30	2	5	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	1/0	a0002	310	36	1	11	15	1	7	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0003	310	11	3	5	2	1	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0004	310	3	2	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0005	310	2	1	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0006	310	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0008	310	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0009	310	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	a0010	310	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A25_chr7_144064811_144080870	0/1	a0001	310	159	53	25	57	8	15	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	1/0	a0002	310	142	10	25	79	8	19	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	a0003	310	85	2	21	54	0	8	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	a0004	310	18	17	1	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	a0005	310	12	12	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	a0006	310	1	0	0	1	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	a0007	310	1	0	0	1	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A2_chr7_144104583_144115539	0/1	a0001	318	241	38	42	136	5	19	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	1/0	a0002	318	121	20	20	51	6	23	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0003	318	31	23	5	0	3	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0004	318	10	9	1	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0005	318	2	2	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0006	318	1	1	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0007	265	1	0	0	1	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	a0008	318	1	1	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A42_chr7_144223244_144244605	0/0	a0001	310	76	14	13	37	2	10	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	1/0	a0002	310	60	10	13	27	3	6	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/1	a0003	310	14	4	4	3	0	2	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0004	102	3	3	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0005	310	2	2	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0006	310	2	0	0	0	0	2	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0007	310	1	0	0	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0008	102	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0009	310	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0010	310	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	a0011	310	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A4_chr6_131694644_131706401	0/1	a0001	310	233	52	49	95	11	25	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0002	310	92	14	9	60	1	8	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0003	310	25	19	2	0	2	2	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0004	310	8	5	2	0	0	1	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0005	310	7	0	0	7	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0006	310	5	5	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0007	121	3	0	0	3	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0008	310	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0009	310	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0010	310	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0011	310	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0012	310	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	a0013	310	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401