JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2A5_chr7_144043948_144063845	1/1	a0001	311	321	35	50	192	11	31	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0002	311	74	40	18	2	5	9	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0003	171	7	6	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0004	311	5	5	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0005	311	5	4	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0006	311	5	5	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0007	311	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0008	311	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	a0009	311	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A7_chr7_144252663_144269792	0/0	a0001	310	161	40	22	78	8	13	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	a0002	305	19	4	0	14	0	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	a0003	310	2	0	2	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2AE1_chr7_99871062_99882033	1/1	a0001	323	182	9	46	99	9	17	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0002	323	127	20	20	64	5	18	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0003	323	46	38	4	0	2	2	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0004	323	21	20	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0005	323	4	4	0	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0006	323	3	3	0	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0007	323	1	0	0	1	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0008	323	1	0	0	0	0	1	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0009	321	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0010	323	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	a0011	323	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AG1_chr11_6778020_6796558	1/1	a0001	316	319	72	65	140	8	32	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0002	316	98	3	17	59	6	13	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0003	316	25	0	0	22	0	3	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0004	316	8	7	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0005	316	3	1	1	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0006	316	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0007	316	3	2	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0008	316	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0010	316	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0011	235	1	0	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0012	316	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0013	316	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0014	316	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	a0015	316	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG2_chr11_6760626_6776976	0/0	a0001	316	180	31	30	103	7	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0002	316	85	9	15	46	6	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0003	316	64	32	7	15	1	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	1/1	a0004	316	48	7	11	24	0	4	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0005	316	46	1	10	24	1	10	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0006	316	32	10	2	18	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0007	316	3	3	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0008	316	2	0	2	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0009	316	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0010	316	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0011	316	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0012	316	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976