JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2AG2_chr11_6760626_6776976	0/0	a0013	316	1	0	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	a0014	316	1	0	0	0	1	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AJ1_chr1_247919889_247940339	1/1	a0001	328	415	92	73	186	14	48	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0002	328	5	0	0	5	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0003	328	4	3	1	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0004	328	4	0	2	0	2	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0005	328	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0006	328	1	0	0	1	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0007	328	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	a0008	328	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AK2_chr1_247960233_247971386	0/0	a0001	320	169	9	47	78	14	21	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/1	a0002	320	156	22	23	89	3	18	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	1/0	a0003	320	81	57	9	14	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0004	320	13	0	0	11	1	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0005	320	7	6	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0006	320	3	2	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0007	320	1	0	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0008	320	1	0	0	0	0	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	a0009	320	1	0	0	0	0	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AP1_chr12_55567468_55580612	1/0	a0001	309	425	72	69	226	17	40	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/1	a0002	309	24	2	10	5	1	5	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0003	309	14	14	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0004	309	9	8	1	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0005	309	2	2	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0006	309	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0007	215	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0008	309	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	a0009	24	1	0	0	0	0	1	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AT4_chr11_75076753_75101876	1/1	a0001	320	406	94	59	197	16	38	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0002	320	2	0	0	2	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0003	320	2	2	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0004	320	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0005	320	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0006	320	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0007	320	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0008	320	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	a0009	320	1	0	1	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2B11_chr1_247444182_247463104	0/0	a0001	8	220	35	47	111	3	24	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/1	a0002	317	122	8	13	78	8	14	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0003	317	45	17	6	18	3	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0004	317	22	2	14	1	2	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0005	317	17	16	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0006	317	14	1	3	7	0	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0007	317	12	0	0	8	2	2	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	1/0	a0008	317	5	3	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0009	273	3	3	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0010	317	3	2	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0011	317	3	3	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0012	317	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0013	317	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104