JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2B11_chr1_247444182_247463104	0/0	a0014	317	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0015	317	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0016	317	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0017	317	1	0	0	0	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0018	317	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0019	317	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	a0020	317	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B2_chr6_27906185_27917396	1/1	a0001	357	342	78	59	152	13	38	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0002	357	25	1	11	9	0	4	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0003	357	11	7	2	0	0	2	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0004	357	9	2	6	0	1	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0005	357	5	0	0	5	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0006	357	3	3	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0007	357	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0008	357	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	a0009	357	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B3_chr6_29081208_29092313	0/1	a0001	313	408	96	73	184	14	40	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	a0002	313	1	0	1	0	0	0	copy fasta	OR2B3	chr6	29081208	29092313
OR2B6_chr6_27952241_27963182	1/0	a0001	313	348	81	54	172	9	31	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	a0002	313	34	1	11	17	0	5	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/1	a0003	313	25	12	4	4	3	1	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	a0004	313	6	0	3	1	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	a0005	313	2	0	0	0	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	a0006	313	2	0	0	0	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	a0007	313	1	0	0	0	0	1	copy fasta	OR2B6	chr6	27952241	27963182
OR2C1_chr16_3350889_3362306	0/1	a0001	312	276	64	45	130	8	28	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0002	312	97	28	20	36	6	7	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0003	312	29	0	11	18	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0004	284	15	0	1	10	0	4	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0005	312	4	4	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0006	312	3	0	0	0	0	3	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0007	312	2	2	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	1/0	a0008	312	1	0	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0009	312	1	0	0	0	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0011	312	1	0	0	0	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0012	312	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	a0013	312	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C3_chr1_247519677_247541440	0/1	a0001	320	351	65	63	181	13	28	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0002	320	74	12	12	36	1	13	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0003	320	17	4	2	0	4	7	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0004	320	7	7	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0005	320	6	6	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0006	320	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0007	320	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	a0008	320	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	1/0	a0009	320	1	0	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2D2_chr11_6886574_6897500	0/0	a0001	308	213	44	26	111	5	27	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0002	308	147	3	24	100	8	12	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/1	a0003	308	70	2	27	28	5	7	copy fasta	OR2D2	chr11	6886574	6897500