JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2D2_chr11_6886574_6897500	1/0	a0004	308	21	16	4	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0005	282	14	13	1	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0006	63	4	4	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0007	308	4	4	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0008	308	3	3	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0009	308	3	0	0	3	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0010	308	2	2	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	a0011	282	1	1	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D3_chr11_6916002_6926994	1/0	a0001	330	208	50	22	107	7	21	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0002	330	107	7	18	71	5	6	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0003	330	86	3	20	46	2	15	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/1	a0004	330	27	11	9	1	3	2	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0005	132	15	8	6	0	0	1	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0006	330	14	14	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0007	330	3	2	1	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0008	330	1	0	0	0	1	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0009	330	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0010	330	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0011	330	1	1	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0012	330	1	0	0	0	0	1	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	a0013	330	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2F1_chr7_143949844_143969360	1/1	a0001	317	288	39	45	155	9	38	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0002	317	67	10	15	38	0	4	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0003	317	29	25	3	0	1	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0004	317	12	12	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0005	317	2	1	1	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0006	317	2	0	0	2	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0007	317	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	a0008	317	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F2_chr7_143930233_143941186	1/1	a0001	317	183	25	33	90	10	23	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0002	317	151	33	19	94	0	5	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0003	317	25	22	2	0	1	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0004	317	15	10	4	0	1	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0005	317	12	2	2	7	0	1	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0006	317	3	0	0	3	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	a0007	317	1	0	0	0	0	1	copy fasta	OR2F2	chr7	143930233	143941186
OR2G2_chr1_247583360_247594313	0/0	a0001	317	118	2	12	93	5	6	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/1	a0002	317	107	15	16	52	5	18	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	1/0	a0003	317	87	36	7	37	0	6	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0004	317	45	0	9	32	0	4	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0005	317	21	1	7	1	3	9	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0006	317	19	15	4	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0007	317	13	0	12	0	0	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0008	317	9	8	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0009	317	8	0	3	3	0	2	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0010	317	5	4	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0011	317	5	0	0	3	1	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0012	317	5	5	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0013	317	4	1	1	0	1	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0014	317	3	1	1	0	1	0	copy fasta	OR2G2	chr1	247583360	247594313