JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2G2_chr1_247583360_247594313	0/0	a0015	317	2	0	2	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0016	317	2	2	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0017	317	2	2	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0018	317	1	0	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0019	317	1	0	0	1	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0020	317	1	1	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0021	317	1	0	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	a0022	317	1	1	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G3_chr1_247600586_247611515	1/1	a0001	309	236	42	41	115	6	30	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0002	309	110	19	12	65	7	7	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0003	309	32	1	18	1	3	9	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0004	309	12	11	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0005	309	10	10	0	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0006	309	6	6	0	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0007	309	3	0	0	3	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0008	309	2	1	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	a0009	309	1	0	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2H1_chr6_29452155_29469328	0/1	a0001	316	415	74	73	208	13	46	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0002	316	12	9	2	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0003	316	5	4	1	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0004	316	4	0	3	0	1	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0005	316	3	0	0	3	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0006	316	3	3	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0007	316	2	0	0	2	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0008	316	2	0	1	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0009	316	2	2	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0010	316	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0011	316	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0012	316	1	0	0	0	0	1	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0013	316	1	0	0	0	0	1	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	a0014	316	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H2_chr6_29580121_29595500	0/0	a0001	312	185	56	27	77	11	14	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/1	a0002	312	156	25	27	91	2	10	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0003	312	74	9	21	27	3	14	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0004	312	28	3	3	20	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0005	312	4	0	0	2	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0006	312	3	0	3	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0007	312	3	0	0	3	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0008	312	3	0	0	0	0	3	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0009	312	2	0	0	0	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0010	312	1	0	0	0	0	1	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	a0012	312	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2I1P_chr6_29545407_29562773	0/1	a0001	315	354	49	73	173	15	43	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0002	315	96	43	7	44	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0003	315	8	4	2	0	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0004	315	2	0	2	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0005	315	2	1	0	0	1	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0006	315	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0007	315	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773