JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2I1P_chr6_29545407_29562773	0/0	a0008	315	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0010	315	1	0	0	0	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0011	315	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	a0012	258	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2J1_chr6_29094490_29107701	0/1	a0001	312	147	61	18	47	3	17	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	a0002	312	147	33	25	74	6	9	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	a0003	193	144	3	35	81	5	20	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	a0004	312	5	0	0	5	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	a0006	193	1	0	0	1	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J2_chr6_29165907_29180811	0/0	a0001	312	235	69	34	109	6	17	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0002	312	138	3	32	76	6	21	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/1	a0003	312	20	5	4	6	1	3	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0004	312	20	0	1	17	0	2	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0005	312	14	6	2	0	3	3	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0006	312	4	4	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0007	312	3	3	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0008	312	2	0	0	2	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0011	312	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0012	312	1	0	1	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0013	312	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0014	312	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	a0015	312	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J3_chr6_29103058_29119770	0/0	a0001	311	143	22	23	83	6	9	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0002	311	140	3	33	77	7	20	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0003	311	68	34	7	20	2	5	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/1	a0004	311	59	19	8	21	1	9	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0005	311	14	9	5	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0006	311	8	7	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0007	311	2	1	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0008	88	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0009	311	1	0	0	0	0	1	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2K2_chr9_111322229_111335224	1/1	a0001	316	355	81	67	153	16	36	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0002	316	54	0	1	44	1	8	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0003	316	8	8	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0004	316	3	0	0	3	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0005	316	2	2	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0006	316	2	2	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0007	316	1	1	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0008	316	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	a0010	316	1	0	0	0	1	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2L13_chr1_248090184_248106163	1/1	a0001	312	396	60	72	209	11	42	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0002	312	23	22	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0003	312	7	6	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0004	312	3	0	0	3	0	0	copy fasta	OR2L13	chr1	248090184	248106163