JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2L13_chr1_248090184_248106163	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0006	312	2	1	0	1	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0007	312	2	0	2	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0009	312	1	0	0	0	1	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L2_chr1_248025070_248047305	1/1	a0001	312	215	27	49	96	12	29	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0002	312	151	42	14	86	2	7	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0003	312	13	11	2	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0004	312	6	5	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0005	312	5	4	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0006	312	4	3	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0007	312	2	2	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L3_chr1_248041836_248068407	1/1	a0001	312	227	28	42	118	11	26	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0002	312	114	23	13	71	2	5	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0003	312	31	29	2	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0004	312	11	10	1	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0005	312	6	1	4	0	1	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0006	312	5	5	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0007	312	3	0	0	2	0	1	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L5_chr1_248008660_248029276	1/1	a0001	312	369	85	65	177	11	29	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0002	312	13	0	0	12	0	1	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0003	312	11	0	7	0	2	2	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0004	311	5	3	2	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0005	312	3	2	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0006	312	2	0	0	2	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0007	312	2	1	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0011	312	1	0	0	0	1	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0012	312	1	0	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0013	312	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	a0014	312	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L8_chr1_247943858_247954796	0/0	a0001	288	273	30	65	123	15	40	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0002	312	71	47	8	16	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0003	312	14	0	1	11	1	1	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	1/0	a0004	312	9	8	0	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0005	312	7	6	1	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0006	312	2	1	1	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0007	288	1	0	0	1	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0008	288	1	0	0	1	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	a0009	288	1	0	0	0	0	1	copy fasta	OR2L8	chr1	247943858	247954796
OR2M2_chr1_248169821_248186067	0/0	a0001	347	237	56	54	86	12	29	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	1/1	a0002	347	199	29	21	126	6	15	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0003	347	6	5	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067