JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2M2_chr1_248169821_248186067	0/0	a0004	347	6	5	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0005	347	2	2	0	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0006	347	2	1	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0007	347	2	0	0	2	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0008	347	1	0	0	1	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0009	347	1	0	0	1	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0010	347	1	0	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	a0011	347	1	0	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M3_chr1_248192265_248217925	1/1	a0001	312	392	85	68	188	14	35	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0002	312	9	0	1	8	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0003	312	3	3	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0004	312	2	1	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	a0008	312	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M4_chr1_248226417_248249679	1/1	a0001	311	399	94	68	180	14	41	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	a0002	311	1	0	0	0	0	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M5_chr1_248140148_248151086	1/1	a0001	312	312	77	45	146	12	30	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0002	312	24	5	2	16	0	1	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0003	312	11	0	0	11	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0004	312	8	0	8	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0005	312	7	0	2	5	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0006	312	5	5	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0007	312	5	0	0	5	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0008	304	4	0	0	4	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0009	312	3	3	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0012	312	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0013	312	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0014	312	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0015	312	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0016	312	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0017	312	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0018	312	1	0	0	0	0	1	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0019	312	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	a0020	312	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M7_chr1_248318630_248329568	0/0	a0001	312	156	57	20	67	4	8	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0002	312	145	7	26	82	6	24	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	1/0	a0003	312	73	15	17	34	4	2	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0004	312	9	9	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0005	312	7	6	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0006	312	2	2	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0007	312	2	1	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0010	312	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	a0012	312	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568