JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2S2_chr9_35952108_35963154	1/1	a0001	319	288	46	49	142	13	36	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0002	319	131	27	24	64	3	13	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0003	319	10	8	1	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0004	319	7	7	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0005	319	4	4	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0006	319	2	2	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0007	319	2	2	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0008	72	2	0	0	2	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0009	319	1	0	0	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	a0010	35	1	0	0	0	0	1	copy fasta	OR2S2	chr9	35952108	35963154
OR2T10_chr1_248585487_248602700	1/1	a0001	312	301	26	56	176	9	32	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	a0002	312	13	13	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	a0003	312	1	0	0	0	1	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	a0004	312	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T11_chr1_248618557_248640091	0/1	a0001	316	226	21	40	126	8	30	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0002	316	56	0	5	49	0	2	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0003	316	9	9	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0004	106	6	5	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	1/0	a0005	316	6	5	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0006	316	2	1	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0007	316	2	0	0	2	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0008	316	2	0	0	2	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0009	316	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0010	316	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0011	316	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0012	316	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	a0013	316	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T12_chr1_248285139_248308424	0/0	a0001	320	138	8	20	83	6	21	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/1	a0002	2	100	2	15	66	4	12	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	1/0	a0003	320	51	6	15	23	4	2	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0004	320	19	17	2	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0005	265	13	0	2	11	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0006	320	12	8	1	3	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0007	320	11	9	2	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0008	320	11	11	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0009	320	9	9	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0010	320	8	8	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0011	320	7	6	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0012	128	4	4	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0013	320	4	0	4	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0014	319	4	3	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0015	320	3	3	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0016	320	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0017	320	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0018	320	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0019	320	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0020	320	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0021	320	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0022	320	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0023	320	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424