Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCC6_chr16_16144565_16228494	0/0	a0008	1503	6	6	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0009	1503	4	1	3	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0010	1503	4	0	2	0	2	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0011	1503	4	3	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0012	1503	4	4	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0013	1503	4	3	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0014	1503	4	4	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0015	1503	3	3	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0016	1503	2	0	0	2	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0017	1503	2	0	0	2	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0018	1503	2	2	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0019	1503	2	0	0	2	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0020	1503	2	0	1	0	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0021	198	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0022	1503	1	0	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0023	1503	1	0	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0024	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0025	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0026	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0027	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0028	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0029	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0030	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0031	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0032	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0033	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0034	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0035	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0036	1503	1	0	0	0	1	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0037	824	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0038	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0039	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0040	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0041	1503	1	0	0	0	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0042	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0043	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0044	1503	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0045	1503	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC8_chr11_17387885_17481845	0/0	a0001	1581	234	75	51	71	11	26	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	1/0	a0002	1581	75	1	12	41	3	17	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/1	a0003	1581	7	3	1	0	0	2	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0004	1581	3	0	0	3	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0005	1581	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0006	1581	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0007	1581	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0008	1581	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0009	1581	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0010	1247	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0011	1581	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0012	1581	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845