Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGAP8_chr22_44747575_44867784	0/0	a0009	433	3	3	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0010	433	2	0	0	2	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0011	433	2	1	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0012	433	2	2	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0013	433	2	0	2	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0014	433	2	0	2	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0015	433	2	0	0	2	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0016	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0017	433	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0018	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0019	221	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0020	433	1	0	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0021	433	1	0	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0022	433	1	0	0	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0023	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0024	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0025	433	1	0	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0026	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0027	433	1	0	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0028	433	1	1	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0029	433	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP9_chr12_57467269_57484866	1/0	a0001	731	224	83	40	78	2	20	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0002	731	132	12	27	69	5	19	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0003	731	17	0	4	9	2	2	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0004	731	12	0	0	12	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0005	731	5	0	0	5	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0006	731	4	0	0	4	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0007	18	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0008	731	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0009	731	1	0	0	0	1	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0010	731	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0011	731	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0012	731	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0013	731	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0014	731	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/1	a0015	731	1	0	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0016	731	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0017	731	1	0	1	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	a0018	731	1	0	0	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGDIA_chr17_81862721_81876337	1/1	a0001	204	383	96	78	149	16	42	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	a0002	204	1	0	0	1	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIB_chr12_14937031_14966601	1/1	a0001	201	462	98	70	233	15	44	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	a0002	201	1	0	0	0	1	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	a0003	201	1	0	0	1	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIG_chr16_275591_288010	1/1	a0001	225	436	96	84	186	18	50	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	a0002	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	a0003	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	a0004	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	a0005	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	a0006	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010