JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T12_chr1_248285139_248308424	0/0	a0024	320	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0025	319	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	a0026	319	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T1_chr1_248398048_248413020	0/0	a0001	318	235	71	56	82	8	18	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0002	318	13	13	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0003	318	8	7	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0004	318	4	0	0	4	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0005	318	2	2	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0006	318	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0007	147	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0008	318	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	a0009	318	1	0	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T27_chr1_248644838_248660528	0/1	a0001	317	167	5	42	74	12	33	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0002	317	48	2	6	36	0	4	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0003	316	37	0	5	30	1	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0004	109	15	0	4	6	2	3	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0005	316	12	0	0	12	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0006	317	8	0	1	5	0	2	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0007	317	8	4	3	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	1/0	a0008	317	6	4	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0009	292	6	6	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0010	292	5	5	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0011	317	5	4	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0012	317	4	4	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0013	317	4	3	0	0	1	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0014	316	4	4	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0015	317	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0016	292	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0017	317	3	2	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0018	317	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0019	109	2	1	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0020	317	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0021	292	2	1	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0022	316	2	0	0	2	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0023	316	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0024	317	2	0	2	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0025	317	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0026	109	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0027	109	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0028	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0029	317	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0030	317	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0031	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0032	291	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0033	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0034	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0035	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0036	317	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0037	316	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0038	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528