JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T27_chr1_248644838_248660528	0/0	a0039	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0040	317	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0041	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0042	317	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0043	291	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0044	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0045	292	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0046	292	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0047	292	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0048	316	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0049	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0050	316	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0051	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0052	316	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0053	317	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	a0054	317	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T29_chr1_248551912_248567772	0/1	a0001	315	168	8	49	79	10	21	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0002	23	95	10	6	66	0	13	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0003	315	11	6	1	3	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0004	315	6	2	1	3	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0005	315	5	5	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0006	315	5	4	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0007	315	4	3	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0008	315	3	3	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0009	315	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0010	315	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0011	315	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0012	315	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0013	315	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0014	315	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0015	315	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0016	315	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0017	315	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0018	315	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0019	315	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0020	315	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	a0021	23	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T2_chr1_248440637_248460725	0/1	a0001	324	166	30	21	92	5	17	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0002	324	140	9	40	61	9	21	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0003	324	8	8	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0004	222	6	0	0	6	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0005	324	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0006	324	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0007	324	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0008	324	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0009	324	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0010	324	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0011	324	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0012	320	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	a0013	320	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725