JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T33_chr1_248264917_248282976	0/0	a0001	320	167	30	24	94	2	17	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/1	a0002	320	89	1	14	62	2	9	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	1/0	a0003	320	69	15	16	32	4	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0004	320	18	14	1	3	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0005	320	16	9	3	0	2	2	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0006	320	5	4	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0007	320	5	4	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0008	320	4	2	1	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0009	320	4	4	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0010	81	4	0	0	4	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0011	320	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0012	320	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0013	320	3	0	0	3	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0014	320	2	0	2	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0015	320	2	2	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0016	320	2	1	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0017	320	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0018	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0019	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0020	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0021	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0022	81	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0023	320	1	0	0	0	0	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0024	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0025	320	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	a0026	320	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T34_chr1_248568801_248579757	0/1	a0001	318	164	7	41	90	8	17	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0002	318	107	4	5	86	0	12	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0003	321	7	7	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0004	318	6	6	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	1/0	a0005	318	5	3	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0006	318	5	4	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0007	318	5	0	0	5	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0008	318	3	3	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0009	318	3	3	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0010	318	2	2	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0011	318	2	0	0	2	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0012	318	1	0	0	0	0	1	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0013	318	1	0	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0014	318	1	0	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0015	318	1	1	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	a0016	318	1	0	0	1	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T35_chr1_248631356_248650278	0/0	a0001	203	289	25	55	162	10	37	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0002	203	5	4	1	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0003	320	4	4	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0004	323	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0005	323	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	1/0	a0006	323	2	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0007	203	1	0	0	0	0	1	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0008	203	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278