JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T35_chr1_248631356_248650278	0/0	a0009	203	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0010	203	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	a0011	203	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T3_chr1_248468351_248479307	0/0	a0001	318	152	7	40	80	8	17	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0002	318	108	7	14	68	2	17	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0003	318	17	5	2	9	1	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0004	318	12	10	2	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0005	318	12	5	3	3	1	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0006	315	10	0	1	9	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0007	321	8	7	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0008	318	2	0	0	2	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0009	318	2	1	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0010	321	2	2	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0011	318	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0012	318	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0013	318	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0014	318	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0015	318	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0016	318	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0017	318	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0018	318	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0019	318	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0020	321	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	a0021	318	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T4_chr1_248356665_248367627	0/0	a0001	231	157	32	32	65	8	20	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0002	320	129	36	15	65	4	9	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0003	100	104	1	15	73	4	11	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0004	140	15	13	2	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0005	107	14	12	2	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0006	100	3	0	0	3	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0007	320	2	2	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0008	320	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0009	320	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0010	231	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	a0011	320	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T5_chr1_248483589_248496113	0/0	a0001	315	143	4	36	76	9	18	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0002	315	75	1	7	60	0	7	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0003	315	28	14	0	11	2	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0004	315	9	0	5	0	2	2	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0005	23	6	0	0	5	0	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0006	315	5	0	2	2	0	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0007	315	5	5	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0008	315	5	4	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0009	315	3	3	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0010	315	2	2	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0011	315	2	2	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0012	315	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0013	315	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0014	315	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	a0015	315	1	0	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113