JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T5_chr1_248483589_248496113	0/0	a0016	315	1	0	0	0	1	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T6_chr1_248370746_248396811	0/0	a0001	308	144	39	30	56	7	12	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/1	a0002	308	137	27	23	71	4	11	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0003	308	86	7	15	53	4	7	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0004	308	18	18	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0005	308	4	4	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0006	308	4	0	1	0	1	2	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0007	308	3	0	0	3	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0008	308	2	1	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0009	308	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0010	308	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0011	308	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0012	308	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	a0013	308	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T8_chr1_247915252_247928152	0/0	a0001	312	124	8	32	57	9	18	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0002	312	83	7	15	45	1	15	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0003	312	41	0	0	41	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/1	a0004	312	31	3	16	0	5	6	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0005	312	16	0	0	16	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0006	312	12	9	3	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0007	312	10	10	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0008	312	9	8	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0009	312	8	8	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0010	312	8	1	1	6	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0011	312	7	0	0	7	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0012	312	7	0	0	7	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0013	312	7	2	2	3	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0014	312	4	3	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0015	312	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0016	312	4	2	0	2	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0017	81	4	3	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0018	312	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0019	312	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0020	312	3	2	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0021	312	3	0	3	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0022	312	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0023	312	2	0	0	2	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0024	312	2	1	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0025	312	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0026	312	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0027	312	2	0	0	1	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0028	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0029	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0030	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0031	312	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0032	312	1	0	0	0	1	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0033	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0034	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0035	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0036	312	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152