JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2T8_chr1_247915252_247928152	0/0	a0037	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0038	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0039	312	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0040	312	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0041	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0042	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0043	81	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0044	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	1/0	a0045	312	1	0	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0046	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0047	312	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0048	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0049	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0050	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0051	312	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	a0052	312	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2V1_chr5_181118122_181136169	1/1	a0001	315	370	49	77	180	17	45	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0002	315	38	35	0	1	1	1	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0003	315	17	7	0	10	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0004	314	3	3	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0005	315	3	0	0	3	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0006	315	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0008	315	1	0	1	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	a0010	315	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V2_chr5_181142586_181164285	0/0	a0001	315	260	56	68	96	11	29	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	1/0	a0002	315	129	22	16	70	4	16	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	a0003	135	26	14	1	5	2	4	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	a0004	315	4	4	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/1	a0005	315	3	0	1	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	a0006	315	1	0	0	0	1	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	a0007	257	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2W1_chr6_29039213_29050175	0/1	a0001	320	279	60	51	124	8	35	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	a0002	320	148	22	21	90	6	9	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	a0003	320	13	9	4	0	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	a0004	320	1	1	0	0	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	a0005	320	1	0	0	1	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	a0006	320	1	0	0	1	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W3_chr1_247890587_247901531	0/0	a0000	0	35	8	11	8	1	7	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	1/0	a0001	314	114	22	18	61	4	8	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/1	a0002	314	106	7	12	68	3	15	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0003	314	42	19	3	20	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0004	314	17	1	10	2	2	2	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0005	314	13	2	5	1	0	5	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0006	314	13	3	2	8	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0007	314	8	0	4	1	2	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0008	314	7	3	3	0	1	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0009	313	5	0	3	0	1	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0010	314	5	0	2	2	0	1	copy fasta	OR2W3	chr1	247890587	247901531