JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR2W3_chr1_247890587_247901531	0/0	a0011	314	4	3	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0012	314	3	3	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0013	314	3	2	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0014	314	2	1	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0015	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0016	314	1	0	0	1	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0017	314	1	0	0	0	0	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0018	314	1	0	0	0	0	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0019	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0020	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0021	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0022	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0023	314	1	0	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0024	314	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	a0025	314	1	0	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2Y1_chr5_180734123_180745058	0/0	a0001	311	433	72	73	225	16	47	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	1/0	a0002	311	15	13	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0003	311	3	2	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0004	311	3	0	0	3	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0005	311	3	0	0	3	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0006	311	2	1	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0007	311	2	2	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0008	311	2	2	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0009	85	1	0	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/1	a0012	311	1	0	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0013	311	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0014	311	1	0	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0015	311	1	0	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0016	311	1	1	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	a0017	311	1	0	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Z1_chr19_8716634_8737160	1/1	a0001	314	430	90	77	203	16	42	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	a0002	314	4	4	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	a0003	314	1	1	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	a0004	314	1	1	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	a0005	314	1	0	0	1	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	a0006	314	1	0	1	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR3A1_chr17_3286017_3303360	0/1	a0001	315	247	19	37	156	10	24	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	1/0	a0002	315	123	52	32	10	6	22	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0003	91	9	8	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0004	315	7	6	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0005	315	3	3	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0006	315	2	0	0	2	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0008	315	2	0	0	2	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0009	77	1	0	0	1	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0010	315	1	0	0	1	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	a0011	315	1	0	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A2_chr17_3271177_3391308	1/0	a0001	315	219	36	40	100	12	30	copy fasta	OR3A2	chr17	3271177	3391308