JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR3A2_chr17_3271177_3391308	0/1	a0002	315	66	24	17	11	2	11	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0003	315	8	7	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0004	315	5	0	0	4	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0005	315	5	5	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0006	315	4	0	0	4	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0008	315	2	0	0	2	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0010	315	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0011	315	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0012	315	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0013	315	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0014	315	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	a0015	315	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A3_chr17_3406370_3429070	0/0	a0001	315	165	22	28	91	4	20	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0002	315	115	27	29	34	6	19	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	1/0	a0003	315	89	4	13	60	3	8	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/1	a0004	315	45	26	2	16	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0005	315	14	9	3	0	1	1	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0006	315	5	4	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0007	315	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0008	315	2	1	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0010	315	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR4A15_chr11_55362974_55373918	0/0	a0001	314	434	89	75	206	16	48	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0002	225	5	0	0	5	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0003	314	4	3	1	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0004	314	4	0	0	4	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0005	314	3	1	1	0	1	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0006	231	2	1	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0007	314	1	1	0	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0010	314	1	0	1	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0011	314	1	0	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	a0012	314	1	0	0	0	1	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A16_chr11_55338201_55349187	1/1	a0001	328	229	67	30	98	10	22	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0002	328	193	22	44	102	5	20	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0003	328	5	4	1	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0004	328	3	0	2	0	1	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0005	43	1	1	0	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0006	328	1	0	1	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0007	328	1	0	0	1	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	a0008	328	1	0	0	1	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A47_chr11_48483793_48494722	1/1	a0001	309	227	50	35	113	5	22	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0002	309	176	38	36	83	9	10	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0003	309	4	4	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0004	309	3	3	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0005	309	2	0	0	0	0	2	copy fasta	OR4A47	chr11	48483793	48494722