JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4A47_chr11_48483793_48494722	0/0	a0006	309	2	2	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0007	309	1	0	1	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A5_chr11_54701832_54712902	1/1	a0001	315	306	57	54	156	8	29	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0002	315	61	0	6	46	2	7	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0003	315	37	13	3	13	3	5	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0004	315	24	3	4	10	4	3	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0005	315	5	5	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0006	315	5	5	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0007	315	5	4	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0008	315	4	4	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0009	315	4	1	2	0	1	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0010	315	3	3	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0011	315	3	0	3	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0012	315	2	0	0	2	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0013	315	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0014	315	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0015	315	1	0	0	0	0	1	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0016	315	1	1	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0017	315	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0018	315	1	0	0	1	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	a0019	315	1	0	0	0	0	1	copy fasta	OR4A5	chr11	54701832	54712902
OR4B1_chr11_48211810_48222739	1/1	a0001	309	247	51	55	114	7	18	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0002	309	129	18	12	76	5	18	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0003	309	40	18	8	7	4	3	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0004	309	6	6	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0005	309	5	5	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0006	309	3	1	1	0	0	1	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0007	309	2	0	0	0	0	2	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0008	309	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0010	309	1	1	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	a0011	309	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4C11_chr11_55597360_55612645	1/0	a0001	310	135	41	18	53	8	14	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0002	310	71	15	14	32	1	9	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/1	a0003	156	10	1	4	1	0	3	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0004	310	6	6	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0005	310	4	3	1	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0006	310	3	3	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0007	310	3	3	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0008	310	3	1	1	0	1	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0009	310	2	2	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	a0010	310	1	1	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C12_chr11_49976473_49987535	0/0	a0001	309	212	38	43	103	8	20	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	1/1	a0002	309	206	58	25	92	10	19	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	a0003	309	1	1	0	0	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	a0004	309	1	0	0	1	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	a0005	309	1	1	0	0	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	a0006	309	1	0	0	0	0	1	copy fasta	OR4C12	chr11	49976473	49987535
OR4C13_chr11_49947391_49958419	0/0	a0001	309	374	86	68	168	14	38	copy fasta	OR4C13	chr11	49947391	49958419