JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4C13_chr11_49947391_49958419	0/0	a0002	309	49	2	6	37	1	3	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0003	309	7	7	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0004	309	4	0	4	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0005	309	3	3	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0006	309	2	0	0	0	0	2	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0007	1	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0008	309	1	0	0	0	0	1	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0010	309	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	1/0	a0011	309	1	0	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	a0012	309	1	0	0	0	1	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C15_chr11_55549469_55560419	1/1	a0001	316	240	61	42	107	10	18	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0002	316	96	8	13	58	4	13	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0003	316	93	16	20	44	1	12	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0004	316	6	0	0	6	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0005	237	5	5	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0006	316	3	1	1	0	1	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0007	237	3	3	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0008	316	2	0	1	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0010	316	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0011	316	1	0	0	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0012	316	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0013	316	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0014	291	1	0	1	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0015	316	1	1	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	a0016	316	1	1	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C16_chr11_55567128_55578060	0/1	a0001	310	172	30	23	89	7	22	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0002	16	116	9	26	69	2	10	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0003	310	93	17	20	43	2	11	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	1/0	a0004	310	28	19	5	0	2	1	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0005	74	6	6	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0006	310	4	0	2	0	0	2	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0007	310	3	3	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0008	310	3	3	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0009	310	3	1	1	0	1	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0010	310	2	0	0	0	0	2	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0011	74	2	2	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0012	310	2	2	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0013	1	1	1	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0014	310	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0015	310	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0016	310	1	1	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0017	310	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	a0018	310	1	0	1	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C3_chr11_48319920_48330955	1/1	a0001	302	434	92	76	204	16	44	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	a0002	302	3	3	0	0	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	a0003	302	3	3	0	0	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C46_chr11_54598069_54608998	0/0	a0001	309	217	24	53	109	6	25	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0002	309	96	15	12	51	5	13	copy fasta	OR4C46	chr11	54598069	54608998