Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGDIG_chr16_275591_288010	0/0	a0007	225	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGEF10L_chr1_17534698_17702869	0/1	a0001	1279	96	30	33	16	3	13	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	1/0	a0002	1279	31	11	7	8	0	4	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0003	1279	8	1	2	1	0	4	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0004	1279	6	6	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0005	1279	4	1	2	0	0	1	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0006	1279	3	1	2	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0007	1279	3	3	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0008	1279	3	1	0	2	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0009	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0010	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0011	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0012	1279	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0013	1279	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0014	1279	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0015	1279	1	0	0	0	1	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0016	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0017	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0018	1279	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0019	1279	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0020	1279	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0021	1279	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	a0022	1279	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10_chr8_1818926_1963641	0/1	a0001	1344	256	58	48	105	16	28	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0002	1344	57	1	8	38	1	9	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0003	1344	6	1	2	1	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0004	1344	6	5	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0005	1344	5	0	2	0	1	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0006	1344	5	0	0	5	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0007	1344	4	0	0	4	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0008	1344	2	0	2	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0009	1344	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0010	1344	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0011	1344	2	1	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0012	1344	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0013	1344	2	0	0	0	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0014	1344	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0015	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0016	1344	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0017	1344	1	0	0	0	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0018	1344	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0019	1344	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0020	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0021	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0022	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0023	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0024	1344	1	1	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	a0025	1344	1	0	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF11_chr1_156929840_157050742	0/0	a0001	1562	150	23	39	62	6	20	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0002	1562	144	48	18	62	3	13	copy fasta	ARHGEF11	chr1	156929840	157050742