JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4C46_chr11_54598069_54608998	1/1	a0003	309	89	28	12	33	4	10	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0004	57	12	11	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0005	309	9	9	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0006	309	4	1	2	0	1	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0007	309	4	4	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0008	309	3	2	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0009	309	3	3	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0010	309	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0011	309	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0012	309	1	0	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0013	309	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0014	309	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0015	309	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	a0016	309	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C5_chr11_48360485_48371465	1/0	a0001	326	168	41	27	73	7	19	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0002	326	118	15	26	57	6	14	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/1	a0003	326	77	18	12	42	1	3	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0004	326	13	0	0	13	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0005	326	5	5	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0006	326	5	4	1	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0007	326	4	4	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0008	326	3	3	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	a0009	326	1	0	0	1	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C6_chr11_55657201_55671096	1/1	a0001	309	210	70	36	72	10	20	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	a0002	309	4	4	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	a0003	309	2	0	0	2	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	a0004	309	1	1	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	a0005	309	1	1	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4D10_chr11_59468315_59484361	1/1	a0001	311	384	77	73	184	11	37	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	a0002	230	41	17	11	10	0	3	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	a0003	311	3	3	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	a0004	311	1	0	0	0	1	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	a0005	230	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D11_chr11_59498576_59509511	1/1	a0001	311	261	60	43	118	14	24	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	a0002	311	115	25	21	57	0	12	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	a0003	311	10	9	1	0	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	a0004	311	1	0	0	1	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	a0005	311	1	0	1	0	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D1_chr17_58143384_58164585	0/0	a0000	0	6	3	3	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	1/0	a0001	310	249	42	51	113	13	29	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/1	a0002	310	95	33	14	29	3	15	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	a0003	310	20	11	6	0	1	2	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	a0004	310	4	4	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	a0005	310	3	0	2	0	1	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	a0006	310	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D2_chr17_58161982_58176116	1/1	a0001	307	248	40	53	110	15	28	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0002	307	91	27	11	44	2	7	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0003	307	28	17	3	0	1	7	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0004	307	7	6	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0005	307	4	3	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116