JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4D2_chr17_58161982_58176116	0/0	a0006	307	4	0	0	4	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0007	307	2	2	0	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0008	307	1	0	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	a0009	307	1	1	0	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D5_chr11_123934617_123945573	1/1	a0001	318	438	85	71	222	16	42	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0002	318	5	5	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0003	318	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0004	318	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0005	318	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0006	318	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0007	318	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0008	318	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	a0009	318	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D6_chr11_59451961_59462905	0/1	a0001	314	241	34	43	126	14	23	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0002	314	56	5	12	31	2	6	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	1/0	a0003	314	26	21	4	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0004	314	26	0	10	13	0	3	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0005	246	20	10	4	6	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0006	314	19	0	3	14	0	2	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0007	314	14	14	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0008	314	4	0	1	0	0	3	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0009	314	4	4	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0010	245	3	2	1	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0011	314	2	0	2	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0012	314	2	2	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0013	314	1	1	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0014	314	1	1	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0015	314	1	0	0	1	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0016	314	1	0	0	1	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	a0017	314	1	0	0	0	0	1	copy fasta	OR4D6	chr11	59451961	59462905
OR4D9_chr11_59506539_59525703	1/1	a0001	314	335	74	59	160	7	33	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0002	314	9	9	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0003	314	7	1	3	0	3	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0004	314	4	3	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0005	314	4	4	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0006	314	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0007	314	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0008	314	1	0	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0009	314	1	0	0	0	0	1	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4E1_chr14_21662886_21678818	0/1	a0001	209	153	3	16	113	3	17	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	1/0	a0002	315	145	38	30	61	7	8	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0003	315	90	26	18	31	2	13	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0004	208	20	0	13	6	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0005	315	16	8	3	0	3	2	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0006	315	9	8	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0007	315	9	9	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0008	315	5	0	3	0	1	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0009	315	4	4	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0010	209	1	0	0	1	0	0	copy fasta	OR4E1	chr14	21662886	21678818