JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4K15_chr14_19970591_19981565	0/0	a0006	324	3	0	0	3	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0007	324	2	2	0	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0008	324	2	0	0	2	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0009	324	1	0	1	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0010	324	1	1	0	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K17_chr14_20105739_20127199	1/1	a0001	312	239	61	49	100	12	15	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	a0002	312	199	35	34	104	4	22	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	a0003	312	4	0	1	0	0	3	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	a0004	312	2	0	0	2	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K1_chr14_19925917_19941757	0/0	a0001	311	74	4	8	60	1	1	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	1/0	a0002	311	69	22	14	24	5	3	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0003	311	41	1	12	21	5	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/1	a0004	311	27	2	4	15	3	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0005	311	15	5	1	7	0	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0006	311	11	3	3	5	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0007	311	10	10	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0008	311	2	2	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	a0011	311	1	0	0	1	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K2_chr14_19870142_19888932	1/0	a0001	314	202	47	32	108	9	5	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/1	a0002	314	45	13	13	8	5	5	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	a0003	314	4	0	0	4	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	a0004	314	2	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	a0005	314	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K5_chr14_19915607_19926578	1/1	a0001	323	145	28	38	59	11	7	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0002	323	67	1	2	62	1	1	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0003	323	12	12	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0004	323	3	3	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0005	323	2	2	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0006	323	2	2	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0007	323	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0008	323	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0009	323	1	0	0	1	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0010	323	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	a0011	323	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4L1_chr14_20055045_20065983	0/0	a0001	91	196	39	39	90	4	24	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/1	a0002	312	190	38	25	102	11	13	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0003	91	36	5	16	7	1	7	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	1/0	a0004	312	9	8	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0005	91	3	2	1	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0006	91	3	0	0	3	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	a0009	312	1	0	1	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4M1_chr14_19768504_19788696	1/1	a0001	313	209	48	36	105	9	9	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0002	313	58	4	12	36	1	5	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0003	313	4	4	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0004	313	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0005	313	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696