JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4M1_chr14_19768504_19788696	0/0	a0006	313	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M2B_chr15_21632909_21643992	0/1	a0001	313	58	5	10	30	3	9	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0002	313	58	2	15	32	1	8	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0003	313	32	6	17	6	0	3	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0004	313	27	8	5	12	0	2	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0005	313	17	4	0	12	0	1	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0006	127	12	2	0	9	0	1	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0007	313	3	3	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0008	313	3	2	1	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0009	313	2	0	0	2	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0010	313	1	1	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0011	313	1	1	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	a0012	313	1	0	0	1	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2_chr15_22075527_22086610	0/0	a0001	313	22	8	0	13	0	1	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0002	313	12	6	2	4	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0003	313	6	0	1	1	2	2	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0004	127	3	0	0	3	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0005	313	2	0	0	2	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0006	313	1	0	1	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0008	176	1	1	0	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0009	313	1	0	0	0	0	1	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	a0010	127	1	0	0	1	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4N2_chr14_19798770_19835253	1/0	a0001	307	117	21	26	62	1	6	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0002	307	63	11	5	38	3	6	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0003	307	40	14	5	14	0	7	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0004	307	18	2	1	14	1	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/1	a0005	307	13	9	0	1	1	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0006	307	11	0	1	8	0	2	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0007	307	4	3	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0008	307	3	2	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0009	307	2	2	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0010	307	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0011	307	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	a0012	307	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N4C_chr15_21646844_21657968	0/0	a0001	316	119	25	30	52	3	9	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0002	316	25	0	5	13	2	5	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	1/0	a0003	316	24	5	5	12	0	1	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/1	a0004	316	19	1	5	7	1	4	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0005	316	12	4	1	7	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0006	316	10	0	0	10	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0007	316	3	3	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0008	316	1	0	0	1	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0009	316	1	1	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0010	316	1	1	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	a0011	316	1	0	0	0	0	1	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4_chr15_22089522_22100862	1/0	a0001	316	25	14	3	4	0	3	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0002	316	7	1	0	5	0	1	copy fasta	OR4N4	chr15	22089522	22100862