JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4N4_chr15_22089522_22100862	0/0	a0003	316	6	3	1	2	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0004	316	3	3	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0005	316	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0006	316	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0007	316	1	0	0	1	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	a0008	316	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N5_chr14_20133820_20150471	1/1	a0001	308	419	78	80	199	14	46	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0002	308	10	2	0	8	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0003	308	7	7	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0004	308	3	3	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0005	308	2	0	0	2	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0006	286	1	1	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0007	308	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0008	308	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0009	308	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	a0010	308	1	1	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4P4_chr11_55630113_55645309	1/1	a0001	312	146	54	25	47	5	13	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	a0002	62	61	7	10	29	4	11	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	a0003	312	7	7	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	a0004	312	4	4	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	a0005	312	3	1	1	0	1	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	a0006	312	3	3	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4Q3_chr14_19738571_19754469	0/1	a0001	321	180	18	30	118	4	9	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	1/0	a0002	321	69	19	12	33	2	2	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0003	321	16	7	4	0	2	3	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0004	321	2	2	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0005	321	2	0	0	2	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0006	321	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0007	321	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0008	167	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0009	321	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0010	321	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0011	176	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	a0012	321	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4S1_chr11_48301223_48312152	1/1	a0001	309	413	89	72	192	17	41	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	a0002	309	3	3	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	a0003	309	3	3	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	a0004	2	3	1	1	0	0	1	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	a0005	309	2	2	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	a0006	309	2	0	1	0	1	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S2_chr11_55643327_55657854	1/1	a0001	311	141	46	20	57	3	13	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0002	311	65	15	6	31	4	9	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0003	311	6	6	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0004	311	4	4	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0005	311	3	1	1	0	1	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0006	311	3	3	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0007	311	2	0	0	0	2	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0008	311	2	2	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	a0010	311	1	0	1	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854