JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4X1_chr11_48258861_48269778	0/0	a0001	305	165	46	20	72	9	18	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0002	271	134	12	27	74	4	17	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/1	a0003	271	80	25	12	38	1	3	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0004	271	8	8	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	1/0	a0005	305	6	4	1	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0006	271	2	0	1	0	0	1	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0007	271	1	0	0	1	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0008	305	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0009	305	1	0	1	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0010	305	1	0	0	0	0	1	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0011	271	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0012	271	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	a0013	305	1	0	0	1	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X2_chr11_48240104_48251015	1/0	a0001	303	351	68	64	170	17	31	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/1	a0002	26	78	21	12	40	1	3	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	a0003	303	6	6	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	a0004	303	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	a0005	303	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	a0006	26	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR51A2_chr11_4949772_4960713	0/1	a0001	313	191	27	42	96	6	19	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0002	313	61	26	2	26	0	7	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0003	313	29	11	7	9	0	2	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0004	313	23	1	1	14	1	6	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0005	313	11	4	3	0	1	3	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0006	313	5	5	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	1/0	a0007	313	5	2	1	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0008	313	4	1	2	0	0	1	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0009	313	3	3	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0010	313	3	3	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0011	313	2	0	0	0	0	2	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0012	313	2	0	0	2	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0013	313	1	0	0	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0014	313	1	0	0	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0015	313	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0016	313	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	a0017	313	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A4_chr11_4937831_4952605	0/0	a0001	313	142	48	12	73	2	7	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/1	a0002	253	132	15	28	74	7	7	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0003	313	53	1	11	21	3	17	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0004	313	49	4	9	26	1	9	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0005	19	19	6	8	0	2	3	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0006	313	13	0	6	7	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	1/0	a0007	313	6	3	2	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0008	313	5	1	0	4	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0009	313	5	5	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0010	253	5	5	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0011	313	4	1	2	0	0	1	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0012	313	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0013	313	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0014	313	2	0	0	0	0	2	copy fasta	OR51A4	chr11	4937831	4952605