JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR51A4_chr11_4937831_4952605	0/0	a0015	313	2	1	0	0	1	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0016	313	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	a0017	253	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A7_chr11_4898783_4914462	1/0	a0001	312	295	82	66	96	12	38	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0002	312	129	9	8	108	1	3	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/1	a0003	312	19	3	8	0	5	2	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0004	312	4	2	2	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0005	312	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0006	312	1	0	0	0	0	1	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51B2_chr11_5318359_5329297	1/0	a0001	312	162	18	24	106	1	12	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0002	312	122	40	24	34	6	18	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0003	312	105	21	24	47	5	8	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/1	a0004	312	47	1	7	34	2	2	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0005	312	18	14	1	0	0	3	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0006	312	5	4	1	0	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	a0009	312	1	0	0	0	0	1	copy fasta	OR51B2	chr11	5318359	5329297
OR51B4_chr11_5296014_5306946	0/1	a0001	310	227	7	43	144	7	25	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	1/0	a0002	310	108	43	15	34	2	13	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0003	310	88	29	23	17	7	12	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0004	310	14	0	1	13	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0005	310	12	11	1	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0006	310	4	0	0	4	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0007	310	3	2	1	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0008	284	2	2	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0009	310	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0010	310	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0011	310	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0012	310	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0013	310	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0014	310	1	0	0	1	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0015	310	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0016	310	1	0	0	1	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	a0017	310	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B5_chr11_5337586_5348524	1/0	a0001	312	152	9	14	119	1	8	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/1	a0002	312	125	23	28	42	6	25	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0003	312	112	10	35	48	7	12	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0004	102	22	20	2	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0005	312	19	18	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0006	312	16	13	3	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0007	312	8	0	0	8	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0008	312	3	2	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0009	312	3	3	0	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0010	312	2	0	0	2	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0011	312	1	0	0	1	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0012	312	1	0	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524