JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR51B5_chr11_5337586_5348524	0/0	a0013	312	1	0	0	0	0	1	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	a0014	312	1	0	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B6_chr11_5346508_5357446	1/0	a0001	312	196	40	36	102	8	9	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0002	312	130	19	18	79	2	12	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0003	312	52	4	12	24	5	7	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0004	312	34	8	6	12	0	8	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/1	a0005	312	31	11	7	2	3	7	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0006	312	12	12	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0007	312	2	2	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0008	312	2	1	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0009	312	2	2	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0012	312	1	0	0	0	0	1	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0013	312	1	0	0	1	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	a0014	312	1	1	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51C1P_chr11_4685423_4702853	1/0	a0001	312	287	70	42	144	8	22	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/1	a0002	312	100	2	17	65	6	9	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0003	312	59	19	20	6	4	10	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0004	312	3	0	0	0	0	3	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0005	312	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	a0011	312	1	0	1	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51D1_chr11_4632477_4648060	1/0	a0001	324	395	89	55	206	12	32	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/1	a0002	324	29	0	13	0	4	11	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0003	324	11	0	10	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0004	324	5	5	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0005	324	2	2	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0006	324	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0007	324	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0008	324	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	a0009	324	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51E1_chr11_4638982_4660488	1/1	a0001	318	431	94	64	215	14	42	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0002	318	15	0	11	0	1	3	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0003	45	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0004	318	1	0	0	0	1	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0005	318	1	0	1	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0006	318	1	0	0	0	0	1	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0007	318	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	a0008	318	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E2_chr11_4675171_4702853	1/1	a0001	320	452	97	78	213	16	46	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0002	320	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0003	320	1	0	0	0	1	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0004	320	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0005	320	1	1	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0006	320	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853