Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF11_chr1_156929840_157050742	1/1	a0003	1562	59	12	10	22	5	8	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0004	1562	2	0	0	2	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0005	1562	2	2	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0006	1562	1	0	1	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0007	1562	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0008	1562	1	0	0	0	0	1	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0009	1562	1	0	0	1	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF11_chr1_156929840_157050742	0/0	a0010	1562	1	1	0	0	0	0	copy fasta	ARHGEF11	chr1	156929840	157050742
ARHGEF12_chr11_120331413_120494937	1/1	a0001	1544	267	72	57	89	16	31	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0002	1544	26	0	0	20	0	6	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0003	1544	7	0	7	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0004	1544	2	2	0	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0005	1544	1	1	0	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0006	1544	1	1	0	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0007	1544	1	0	0	0	0	1	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0008	1544	1	1	0	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0009	1544	1	0	0	1	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF12_chr11_120331413_120494937	0/0	a0010	1544	1	1	0	0	0	0	copy fasta	ARHGEF12	chr11	120331413	120494937
ARHGEF15_chr17_8305241_8327511	0/0	a0001	841	200	41	40	94	8	17	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	1/1	a0002	841	99	19	21	35	5	17	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0003	841	66	7	5	49	0	5	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0004	841	33	13	5	8	2	5	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0005	841	10	2	8	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0006	841	6	6	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0007	841	5	2	2	0	1	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0008	841	1	0	0	1	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0009	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0010	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0011	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0012	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0013	841	1	0	0	1	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0014	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0015	841	1	0	1	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	a0016	841	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF16_chr1_3449665_3486113	0/1	a0001	709	202	25	48	81	15	32	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	1/0	a0002	709	81	38	16	22	0	4	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0003	709	29	10	3	16	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0004	709	5	2	2	0	1	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0005	709	4	4	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0006	709	2	0	0	2	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0007	709	2	0	0	0	0	2	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0008	709	2	0	0	2	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0009	709	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0010	709	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0011	709	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0012	709	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0013	709	1	0	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0014	709	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	a0015	709	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF17_chr11_73303276_73374388	1/1	a0001	2063	111	17	28	45	9	10	copy fasta	ARHGEF17	chr11	73303276	73374388