JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR51E2_chr11_4675171_4702853	0/0	a0007	320	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0008	320	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0009	320	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0010	320	1	0	0	0	1	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	a0011	320	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51F1_chr11_4763979_4774938	1/0	a0001	319	216	56	40	94	5	20	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	a0002	138	64	40	16	0	4	4	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/1	a0003	319	49	1	14	18	5	10	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	a0004	319	7	0	0	7	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	a0005	319	4	3	1	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	a0006	319	1	0	0	1	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	a0007	138	1	0	1	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F2_chr11_4816321_4827456	1/1	a0001	330	384	90	69	172	11	40	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0002	330	15	2	8	0	3	2	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0003	330	2	2	0	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0004	330	1	0	1	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0005	330	1	0	0	0	0	1	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0006	330	1	0	0	1	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0007	330	1	0	0	1	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	a0008	330	1	0	0	0	0	1	copy fasta	OR51F2	chr11	4816321	4827456
OR51G1_chr11_4918374_4929339	0/1	a0001	321	273	63	48	131	9	21	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0002	321	69	2	0	64	2	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	1/0	a0003	321	50	17	9	11	1	11	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0004	321	20	1	14	0	5	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0005	321	16	2	9	1	1	3	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0006	321	6	5	1	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0007	321	3	3	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0008	321	3	0	0	3	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0009	321	2	2	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0010	321	2	0	0	2	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0011	321	1	0	1	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0012	321	1	0	0	0	0	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0013	321	1	0	0	0	0	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0014	321	1	0	0	1	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0015	321	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0016	321	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0017	321	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	a0018	321	1	0	0	1	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G2_chr11_4907588_4924350	1/0	a0001	314	344	41	68	191	12	31	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0002	314	74	43	7	14	1	9	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/1	a0003	314	16	0	8	0	5	2	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0004	314	9	8	1	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0005	314	5	3	2	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0006	314	4	0	0	4	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0007	314	4	0	0	4	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51I1_chr11_5435570_5446514	1/0	a0001	314	165	46	20	83	1	14	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0002	314	105	10	33	37	10	15	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0003	14	84	3	10	64	0	7	copy fasta	OR51I1	chr11	5435570	5446514