JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR51I1_chr11_5435570_5446514	0/0	a0004	314	67	9	9	41	1	7	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/1	a0005	314	21	7	10	0	2	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0006	314	10	9	1	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0007	314	5	4	1	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0008	314	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0009	314	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0010	314	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0011	314	2	0	2	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0012	314	1	1	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0013	314	1	0	0	1	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0014	314	1	0	0	0	0	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	a0015	314	1	0	0	0	0	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I2_chr11_5444323_5461518	0/0	a0000	0	25	23	2	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	1/0	a0001	312	200	32	28	109	6	24	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0002	312	111	9	14	68	4	16	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/1	a0003	255	56	4	25	13	6	7	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0004	312	48	1	7	37	0	3	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0005	312	26	23	3	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0006	312	7	6	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0007	312	2	1	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0008	49	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0011	312	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0012	312	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0013	312	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	a0014	312	1	0	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51L1_chr11_4989851_5010536	1/1	a0001	315	325	63	52	167	10	31	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0002	315	79	23	12	24	5	15	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0003	315	38	0	9	26	0	3	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0004	315	17	0	13	2	1	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0005	315	6	6	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0006	315	2	2	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0007	315	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0008	315	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	a0009	315	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51M1_chr11_5378812_5398263	0/0	a0001	326	150	33	40	63	3	11	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	1/0	a0002	326	143	14	19	91	5	13	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/1	a0003	326	137	35	20	55	4	22	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0004	326	7	7	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0005	326	4	4	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0006	326	3	3	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0007	326	2	0	2	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0008	326	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0009	326	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0010	326	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	a0011	326	1	0	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51Q1_chr11_5417111_5428206	1/0	a0001	317	208	62	48	66	10	21	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/1	a0002	235	120	24	20	51	4	20	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0003	235	93	4	6	76	0	7	copy fasta	OR51Q1	chr11	5417111	5428206