JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR51Q1_chr11_5417111_5428206	0/0	a0004	317	23	0	6	17	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0005	317	3	3	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0006	235	2	0	0	2	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0007	317	2	0	0	0	2	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0008	317	2	2	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	a0009	317	1	1	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51S1_chr11_4843237_4854208	1/0	a0001	323	243	32	39	152	5	14	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0002	323	50	9	5	17	2	17	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/1	a0003	323	46	6	15	4	7	13	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0004	323	23	22	1	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0005	323	18	1	11	0	4	2	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0006	323	14	13	1	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0007	323	8	6	2	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0008	323	2	2	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0009	323	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0010	323	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0011	323	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0012	323	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0013	323	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0014	323	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	a0015	323	1	0	0	1	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51T1_chr11_4876900_4887883	1/1	a0001	327	419	96	80	188	16	37	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0002	327	2	0	0	0	0	2	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0003	327	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0004	327	1	0	0	0	0	1	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0005	327	1	0	0	1	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0006	327	1	0	0	1	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	a0007	327	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51V1_chr11_5194735_5205682	1/0	a0001	315	162	19	26	95	2	19	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0002	315	130	21	16	75	6	12	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/1	a0003	315	120	25	37	35	8	14	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0004	164	12	12	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0005	315	9	8	1	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0006	315	5	3	0	0	0	2	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0007	315	3	3	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0008	315	2	0	0	2	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0009	315	1	0	0	0	0	1	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0010	315	1	1	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	a0011	315	1	0	0	1	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR52A1_chr11_5141824_5159757	0/0	a0000	0	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/1	a0001	312	327	75	49	165	9	28	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	a0002	280	65	12	27	6	4	16	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	a0003	312	29	0	3	23	1	2	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	1/0	a0004	312	11	8	2	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A5_chr11_5123776_5143356	1/1	a0001	316	379	68	74	174	15	46	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0002	316	18	17	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0003	316	4	3	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356