JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52A5_chr11_5123776_5143356	0/0	a0004	316	4	0	0	4	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0005	316	3	3	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0006	316	2	0	0	2	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0007	316	2	2	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0008	316	2	2	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0009	177	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0010	316	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0011	316	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	a0012	316	1	0	0	0	1	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52B2_chr11_6164355_6175326	0/0	a0000	0	1	1	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	1/1	a0001	323	378	72	66	181	17	40	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0002	323	11	4	2	5	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0003	323	9	9	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0004	323	4	3	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0005	323	2	2	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0006	323	2	0	2	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0007	323	1	0	0	1	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0008	198	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0009	323	1	0	0	0	1	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0010	323	1	0	0	1	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0011	323	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0012	323	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	a0013	323	1	1	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B4_chr11_4362263_4373386	1/0	a0001	314	284	81	47	116	9	30	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/1	a0002	83	174	13	34	104	5	17	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0003	314	2	0	1	0	0	1	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0004	314	2	0	0	2	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0005	314	1	0	0	1	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0006	314	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0007	314	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B6_chr11_5575877_5586884	0/1	a0001	335	287	60	44	151	5	26	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0002	335	76	11	7	49	4	5	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	1/0	a0003	335	32	4	9	1	5	12	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0004	335	26	9	11	0	2	4	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0005	335	15	3	10	2	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0006	335	6	6	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0007	335	4	4	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0008	335	2	2	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0009	335	1	1	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0010	335	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0011	335	1	0	0	0	0	1	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0012	326	1	0	1	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0013	335	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	a0014	335	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52D1_chr11_5483685_5494749	1/0	a0001	318	242	61	33	121	5	21	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0002	317	81	1	5	66	0	9	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/1	a0003	318	49	4	22	12	4	6	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0004	235	47	5	14	21	4	3	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0005	318	20	8	3	0	3	6	copy fasta	OR52D1	chr11	5483685	5494749