JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52D1_chr11_5483685_5494749	0/0	a0006	318	7	6	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0007	318	6	6	0	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0008	318	6	0	0	6	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0009	317	6	0	6	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0010	318	3	3	0	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0011	318	1	0	0	1	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0012	235	1	0	0	1	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	a0013	318	1	0	0	0	0	1	copy fasta	OR52D1	chr11	5483685	5494749
OR52E2_chr11_5053650_5064627	0/0	a0001	325	123	13	20	72	4	14	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/1	a0002	325	112	27	18	35	6	25	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0003	325	70	22	26	20	0	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	1/0	a0004	325	67	9	3	51	3	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0005	325	42	0	11	28	1	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0006	325	16	16	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0007	325	7	4	1	2	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0008	325	4	0	1	0	0	3	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0009	325	2	2	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0010	325	2	0	0	0	0	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0011	325	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0012	325	1	0	0	1	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0013	325	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0014	325	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	a0015	325	1	0	0	1	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E4_chr11_5875629_5892079	0/0	a0001	312	172	39	22	88	7	16	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/1	a0002	312	165	33	29	78	7	17	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	1/0	a0003	312	95	15	16	51	4	8	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	a0004	312	5	4	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	a0005	312	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	a0007	312	1	0	0	0	0	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E5_chr11_5888208_5907730	0/1	a0001	327	354	69	56	175	14	39	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0002	327	43	10	2	27	2	2	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0003	327	22	0	8	14	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	1/0	a0004	327	18	4	7	2	0	4	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0005	327	6	0	0	6	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0006	327	5	4	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0007	327	4	3	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0008	327	3	0	0	0	0	3	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0009	327	2	0	0	0	0	2	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0010	315	2	2	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0011	56	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0012	327	1	0	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0013	327	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0014	315	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	a0015	327	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E6_chr11_5835928_5846897	1/0	a0001	313	259	53	47	127	6	25	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0002	313	152	22	18	91	5	16	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0003	313	13	0	5	0	5	3	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0004	313	6	5	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0005	313	4	4	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897