JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52E6_chr11_5835928_5846897	0/0	a0006	313	3	1	2	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0007	313	1	0	0	0	0	1	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0009	313	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0010	313	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/1	a0011	313	1	0	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0012	313	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0013	313	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0014	313	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0015	313	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0016	313	1	0	0	0	0	1	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0017	313	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0018	313	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	a0019	313	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E8_chr11_5851749_5862690	0/1	a0000	0	181	42	36	77	5	20	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	1/0	a0001	313	232	34	34	129	11	23	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0002	313	6	0	0	6	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0003	313	5	0	4	0	0	1	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0004	313	5	5	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0005	313	2	1	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0006	313	1	1	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0007	313	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0008	313	1	0	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0009	313	1	1	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	a0010	313	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52H1_chr11_5539561_5553540	0/0	a0001	314	138	23	18	76	2	19	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/1	a0002	314	119	34	43	21	8	12	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0003	314	95	16	10	62	1	6	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	1/0	a0004	314	45	5	10	22	3	4	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0005	314	7	7	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0006	314	5	5	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0007	314	3	3	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0008	314	3	0	0	0	0	3	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0009	314	3	2	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0010	314	3	2	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0011	314	2	2	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0012	314	2	0	0	2	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0013	314	1	0	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0014	314	1	1	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	a0015	291	1	0	0	1	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52I1_chr11_4589039_4600013	0/0	a0000	0	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/1	a0001	324	307	33	53	161	15	44	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	1/0	a0002	324	48	42	4	1	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0003	324	8	8	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0004	324	8	7	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0005	324	7	0	5	0	1	1	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0006	324	7	0	0	7	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0007	324	2	0	0	2	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0008	324	2	2	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0009	324	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013