JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52I1_chr11_4589039_4600013	0/0	a0010	324	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0011	324	1	0	0	1	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0012	324	1	0	0	0	0	1	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0013	324	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0014	324	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0015	324	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	a0016	324	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I2_chr11_4576743_4598340	0/0	a0001	324	194	29	25	115	3	22	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	1/0	a0002	324	184	50	29	79	7	18	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/1	a0003	324	22	0	11	0	5	5	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0004	324	13	11	2	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0005	324	4	4	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0006	324	4	0	3	0	1	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0007	324	2	0	0	2	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0008	324	2	2	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	a0009	324	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52J3_chr11_5041526_5052461	1/0	a0001	311	244	29	34	152	10	18	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0002	311	107	42	13	33	4	15	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0003	302	46	3	19	22	0	2	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/1	a0004	311	40	14	9	3	1	12	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0005	302	2	1	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0006	311	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0007	311	1	0	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0008	311	1	0	0	0	0	1	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0009	302	1	0	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0010	311	1	0	0	0	1	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0012	311	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0013	311	1	0	0	1	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	a0014	311	1	0	0	1	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52K1_chr11_4477646_4498497	1/0	a0001	314	223	33	57	93	14	25	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0002	314	111	16	10	64	4	17	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0003	314	58	37	4	15	0	2	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0004	314	4	4	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0005	314	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0006	314	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0009	314	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/1	a0010	314	1	0	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	a0011	314	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K2_chr11_4444295_4455361	1/1	a0001	314	382	31	73	214	18	44	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0002	314	50	31	5	12	0	2	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0003	314	21	20	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0004	314	11	11	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0005	314	4	4	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0006	314	2	0	2	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0007	314	2	0	0	0	0	2	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0008	314	2	1	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361