JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52K2_chr11_4444295_4455361	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0011	314	1	0	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	a0012	314	1	0	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52L1_chr11_5980892_5991985	1/1	a0001	329	248	40	44	123	9	30	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0002	329	87	1	18	61	3	4	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0003	329	44	13	4	19	0	8	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0004	329	21	17	2	0	0	2	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0005	329	18	5	3	3	4	3	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0006	329	11	11	0	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0007	329	5	0	3	0	2	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0008	329	5	4	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0009	329	3	0	2	0	0	1	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0010	329	2	0	0	2	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0011	329	1	1	0	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	a0012	329	1	0	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52M1_chr11_4540191_4551144	1/0	a0001	317	257	42	54	119	14	27	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/1	a0002	317	149	36	19	67	4	22	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0003	44	11	3	1	7	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0004	317	4	3	1	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0005	317	3	3	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0006	317	2	2	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0007	317	1	1	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0008	317	1	0	0	0	0	1	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0009	317	1	0	1	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	a0010	317	1	0	0	1	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52N1_chr11_5781471_5796265	0/1	a0001	320	201	23	40	102	11	24	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0002	320	83	37	11	27	3	5	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0003	320	64	4	10	40	2	8	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	1/0	a0004	320	41	8	9	22	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0005	320	17	16	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0006	320	5	3	2	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0007	320	2	2	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0008	235	1	0	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0009	320	1	0	0	0	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0010	320	1	0	0	1	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0011	320	1	1	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	a0012	320	1	0	0	0	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N2_chr11_5803924_5826483	1/0	a0001	321	202	46	31	98	4	22	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/1	a0002	321	160	18	28	82	12	19	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0003	321	15	14	1	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0004	321	14	9	4	0	0	1	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0005	321	5	3	2	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0006	294	2	0	0	0	2	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0007	321	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0008	321	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0009	321	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	a0010	321	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N4_chr11_5749243_5760958	0/0	a0001	321	239	31	41	129	11	27	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/1	a0002	321	83	18	11	43	2	8	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0003	171	66	12	11	33	3	7	copy fasta	OR52N4	chr11	5749243	5760958