JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR52N4_chr11_5749243_5760958	1/0	a0004	321	44	7	12	23	0	1	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0005	321	17	16	1	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0006	321	10	8	2	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0007	321	10	1	5	1	0	3	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0008	321	1	1	0	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0009	321	1	0	0	1	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	a0010	321	1	0	1	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N5_chr11_5771165_5788355	1/1	a0001	324	268	71	58	94	14	29	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0002	324	61	4	12	35	2	8	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0003	324	4	4	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0004	324	2	0	0	2	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0005	324	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0006	324	1	0	0	0	0	1	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	a0007	324	1	1	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52R1_chr11_4798433_4809380	1/1	a0001	315	311	44	55	163	10	37	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0002	315	79	42	22	5	5	5	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0003	315	8	1	4	0	1	2	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0004	315	5	5	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0005	315	3	3	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0006	315	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0007	315	1	0	0	1	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0008	315	1	0	1	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0009	315	1	0	0	1	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0010	315	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52W1_chr11_6194224_6205186	0/1	a0001	320	267	24	49	155	11	27	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	1/0	a0002	320	86	55	14	3	4	9	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0003	320	63	0	8	44	1	10	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0004	320	14	6	4	4	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0005	320	7	0	7	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0006	320	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0007	320	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	a0008	320	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR56A1_chr11_6014336_6035758	1/0	a0001	314	396	96	82	157	16	44	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	a0002	314	2	0	0	0	0	2	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	a0003	314	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	a0004	314	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	a0005	314	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/1	a0006	314	1	0	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A3_chr11_5937251_5956347	0/1	a0001	315	277	46	54	142	9	25	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	1/0	a0002	315	190	43	27	92	9	18	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	a0003	26	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	a0004	315	1	0	1	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	a0005	315	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347
OR56A4_chr11_5994445_6011946	1/1	a0001	313	415	91	67	205	13	37	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	a0002	313	53	3	16	18	5	11	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	a0003	313	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	a0004	313	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A5_chr11_5962553_5973494	0/0	a0001	313	203	68	25	93	6	11	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	1/1	a0002	313	121	20	24	53	2	20	copy fasta	OR56A5	chr11	5962553	5973494