JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR56A5_chr11_5962553_5973494	0/0	a0003	313	88	1	16	65	3	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0004	167	13	2	2	3	3	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0005	313	4	0	1	0	0	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0006	167	1	0	0	0	1	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0007	313	1	0	0	1	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0009	313	1	0	0	1	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0010	313	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0011	313	1	0	0	0	1	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	a0012	313	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56B1_chr11_5731448_5743523	0/1	a0001	324	309	58	49	150	17	34	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	1/0	a0002	324	102	15	18	56	0	12	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0003	324	14	0	5	9	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0004	324	10	10	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0005	324	3	3	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0006	324	2	2	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0007	324	2	1	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0008	324	2	1	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0009	324	2	0	0	0	0	2	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0010	324	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0011	324	1	0	0	0	1	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0012	324	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	a0013	324	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B2P_chr11_5756153_5774080	0/0	a0000	0	59	17	9	24	3	6	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	a0001	295	200	18	33	115	9	25	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	1/1	a0002	295	156	39	33	67	3	12	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	a0003	11	17	16	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	a0004	295	1	0	0	0	1	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	a0005	295	1	0	0	0	0	1	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B4_chr11_6102684_6113835	0/1	a0001	319	222	12	41	138	4	26	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	1/0	a0002	319	154	75	35	22	6	15	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	a0003	319	3	0	0	3	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	a0004	319	3	3	0	0	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	a0005	319	1	0	0	1	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	a0006	319	1	0	0	0	0	1	copy fasta	OR56B4	chr11	6102684	6113835
OR5A1_chr11_59431469_59456380	0/1	a0001	315	229	28	41	121	14	24	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	1/0	a0002	315	147	60	23	53	2	8	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0003	315	26	0	11	12	0	3	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0004	124	2	0	1	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0005	315	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0006	315	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0007	315	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	a0008	315	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A2_chr11_59411969_59431413	1/1	a0001	324	338	91	66	139	8	32	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	a0002	324	58	5	12	33	2	6	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	a0003	324	22	0	3	17	0	2	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	a0004	324	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	a0005	324	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5AC2_chr3_98082173_98093102	0/0	a0000	0	30	6	11	1	6	6	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0001	309	209	48	28	107	4	22	copy fasta	OR5AC2	chr3	98082173	98093102