JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF17_chr11_73303276_73374388	0/0	a0002	2064	52	39	9	0	3	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0003	2064	32	26	0	6	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0004	2064	8	0	3	0	1	4	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0005	2063	4	0	0	4	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0006	2063	3	3	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0007	2063	3	0	0	3	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0008	2063	2	0	1	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0009	2064	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0010	2063	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0011	2063	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0012	2063	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0013	2063	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0014	2063	1	0	0	0	1	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0015	2064	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0016	2064	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0017	2064	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0018	2063	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0019	2064	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	a0020	2063	1	0	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF18_chr19_7343937_7477478	0/0	a0001	1361	151	34	34	45	10	28	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0002	1361	48	27	1	19	0	1	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	1/1	a0003	1361	34	2	12	14	0	4	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0004	1361	8	0	5	3	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0005	1361	6	5	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0006	1361	6	0	0	6	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0007	1361	5	5	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0008	1361	5	0	0	5	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0009	1361	4	4	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0010	1361	3	0	0	3	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0011	1361	2	2	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0012	1361	2	2	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0013	1361	2	0	0	0	2	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0014	1361	2	1	1	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0015	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0016	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0017	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0018	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0019	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0020	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0021	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0022	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0023	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0024	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0025	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0026	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0027	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0028	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0029	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0030	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0031	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478