JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5AC2_chr3_98082173_98093102	1/1	a0002	309	175	19	30	100	8	16	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0003	309	10	0	4	6	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0004	232	8	8	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0005	309	8	1	2	4	0	1	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0006	309	7	5	2	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0007	95	5	4	1	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0008	309	4	2	0	2	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0009	232	4	4	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0010	309	1	1	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	a0011	309	1	0	0	0	0	1	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AK2_chr11_56983914_56994843	0/0	a0001	309	221	78	36	80	9	18	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	1/0	a0002	309	112	4	34	56	4	13	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0003	309	96	0	6	79	4	7	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/1	a0004	309	17	3	8	0	1	4	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0005	3	3	0	0	0	0	3	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0006	309	3	3	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0007	309	1	1	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0008	309	1	0	0	1	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0009	309	1	1	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	a0010	309	1	0	0	0	0	1	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AN1_chr11_59353895_59376714	0/1	a0001	311	193	33	50	74	8	27	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	1/0	a0002	311	155	49	20	73	2	10	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0003	311	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0004	311	2	0	0	2	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0005	311	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0006	311	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0008	311	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	a0009	311	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AP2_chr11_56636489_56647439	1/1	a0001	316	387	70	67	198	13	37	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0002	316	34	21	10	0	2	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0003	316	9	1	6	0	1	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0004	316	2	1	1	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0005	316	1	0	0	1	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0006	316	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0007	316	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0008	316	1	0	0	0	0	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	a0010	316	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AR1_chr11_56658686_56669618	0/0	a0000	0	2	1	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	a0001	18	303	39	54	162	16	32	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	1/1	a0002	310	104	57	13	23	2	7	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	a0003	310	22	1	1	15	0	5	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	a0004	310	1	0	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AS1_chr11_56022654_56043191	1/0	a0001	324	372	79	67	175	16	34	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/1	a0002	324	41	6	4	25	0	5	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0003	324	5	1	2	0	2	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0004	324	3	3	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0005	324	3	3	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0006	324	2	0	0	2	0	0	copy fasta	OR5AS1	chr11	56022654	56043191