JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5AS1_chr11_56022654_56043191	0/0	a0007	324	1	0	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0008	324	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0009	324	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0010	324	1	1	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0011	324	1	0	0	0	0	1	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	a0012	324	1	1	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AU1_chr14_21149865_21161063	0/1	a0001	311	248	44	46	113	12	32	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	1/0	a0002	311	118	9	24	71	4	9	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0003	311	37	7	4	24	0	2	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0004	311	30	6	3	16	2	3	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0005	311	9	9	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0006	311	8	8	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0007	310	6	5	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0008	311	5	5	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0009	311	2	2	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0010	311	1	1	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0011	311	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0012	311	1	0	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0013	311	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0014	311	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0015	311	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	a0016	311	1	0	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5B12_chr11_58433994_58447236	0/0	a0001	314	303	68	52	142	12	29	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/1	a0002	314	103	22	19	46	3	12	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0003	314	2	0	1	0	1	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0004	314	2	0	2	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0005	314	1	1	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	1/0	a0006	314	1	0	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0007	314	1	0	0	0	0	1	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0009	314	1	0	0	1	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B17_chr11_58353124_58364069	0/0	a0001	314	215	32	42	108	11	22	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	1/1	a0002	314	106	23	22	43	4	12	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0003	314	21	16	0	4	1	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0004	21	14	0	0	14	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0005	314	10	8	2	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0006	314	7	7	0	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0007	314	5	0	0	5	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	a0008	314	2	2	0	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B21_chr11_58501807_58513105	1/1	a0001	309	358	72	65	177	12	30	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	a0002	309	7	6	1	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	a0003	309	7	7	0	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	a0004	309	1	1	0	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	a0005	309	1	0	0	1	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B2_chr11_58416238_58433121	1/0	a0001	309	178	18	27	103	9	20	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/1	a0002	309	89	19	17	43	2	7	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0003	309	89	42	18	21	3	5	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0004	309	8	6	2	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0005	309	8	0	0	8	0	0	copy fasta	OR5B2	chr11	58416238	58433121