JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5B2_chr11_58416238_58433121	0/0	a0006	309	4	4	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0007	309	2	0	2	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0010	309	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	a0011	309	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B3_chr11_58397464_58411874	1/0	a0001	314	230	62	29	100	14	24	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/1	a0002	314	108	23	21	47	4	12	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0003	314	27	0	9	18	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0004	314	12	10	2	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0005	314	3	1	2	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0006	314	2	0	0	2	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0007	314	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	a0010	314	1	0	1	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5BS1P_chr12_48554882_48567956	1/0	a0001	311	201	59	30	87	5	19	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	a0002	311	132	30	16	75	2	9	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/1	a0003	311	100	3	29	47	4	16	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	a0004	311	18	1	6	6	3	2	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	a0005	311	5	4	1	0	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	a0006	311	1	1	0	0	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	a0007	311	1	0	0	1	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5C1_chr9_122783933_122794895	1/1	a0001	320	433	90	70	208	18	45	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	a0002	320	4	4	0	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	a0003	320	2	2	0	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	a0004	320	2	0	0	2	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	a0005	320	1	0	0	0	0	1	copy fasta	OR5C1	chr9	122783933	122794895
OR5D13_chr11_55768438_55779382	0/0	a0001	314	362	78	63	171	15	35	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/1	a0002	314	39	6	5	24	0	3	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	1/0	a0003	314	9	7	1	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0004	197	8	0	0	8	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0005	314	4	1	1	0	2	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0006	314	3	3	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0007	314	2	0	0	2	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0008	314	1	0	0	0	0	1	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0009	314	1	0	0	0	1	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0010	314	1	0	0	0	0	1	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0011	314	1	1	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	a0012	314	1	0	0	1	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D14_chr11_55790556_55801500	0/0	a0001	314	224	35	46	116	4	23	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0002	314	102	13	8	63	5	13	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/1	a0003	314	67	21	12	25	2	6	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0004	314	31	9	4	12	3	3	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	1/0	a0005	314	7	5	1	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0006	314	6	6	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0007	314	4	1	1	0	2	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0008	314	2	2	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0009	314	1	0	0	0	0	1	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500