JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5D14_chr11_55790556_55801500	0/0	a0011	314	1	1	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D16_chr11_55833752_55844738	1/1	a0001	328	361	58	53	197	13	38	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0002	328	26	15	7	0	2	2	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0003	194	12	11	1	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0004	328	8	8	0	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0005	328	7	0	6	0	1	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0006	328	5	1	2	0	2	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0007	328	1	1	0	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0008	328	1	0	1	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	a0009	328	1	0	0	1	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D18_chr11_55814630_55825571	0/1	a0001	313	284	82	48	114	11	28	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0002	313	113	4	27	68	5	9	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0003	313	14	0	0	14	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0004	313	9	0	0	9	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0005	313	4	1	1	0	2	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0006	313	3	0	2	0	0	1	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0007	313	2	0	0	0	0	2	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	1/0	a0008	313	2	1	0	0	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0009	313	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0010	313	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	a0011	313	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D3P_chr11_55718776_55734621	1/1	a0001	323	401	78	70	195	15	41	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0002	323	39	17	4	12	3	3	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0003	323	3	3	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0004	323	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0005	169	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0006	323	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0007	323	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	a0008	323	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5F1_chr11_55988681_55999625	0/1	a0001	314	372	61	62	197	13	38	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0002	314	29	7	1	18	0	3	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0003	314	8	4	2	0	2	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	1/0	a0004	314	8	6	1	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0005	314	7	7	0	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0006	314	6	0	3	0	3	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0007	314	3	3	0	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0008	314	2	0	1	0	0	1	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	a0009	314	1	0	0	1	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5H14_chr3_98142479_98161614	0/0	a0001	310	252	63	38	113	9	29	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	1/1	a0002	310	155	14	33	82	7	17	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0003	310	7	7	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0004	310	7	5	2	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0005	310	6	5	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0006	310	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	a0008	310	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H15_chr3_98161696_98174774	0/0	a0001	313	162	25	33	95	0	9	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	1/1	a0002	313	117	10	24	56	6	19	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0003	313	82	38	15	13	6	10	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0004	313	29	0	2	26	1	0	copy fasta	OR5H15	chr3	98161696	98174774