JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5H15_chr3_98161696_98174774	0/0	a0005	107	17	1	0	9	3	4	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0006	313	13	13	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0007	294	8	8	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0008	313	6	0	0	6	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0009	313	3	1	2	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0010	313	2	0	0	2	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0011	313	2	0	0	2	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0012	294	1	1	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0013	313	1	1	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	a0014	313	1	0	0	1	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H1_chr3_98125721_98143548	0/0	a0001	313	162	26	36	77	5	18	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	1/1	a0002	313	143	13	29	81	7	11	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0003	313	82	39	8	25	2	8	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0004	313	6	1	0	5	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0005	73	4	4	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0006	313	4	3	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0007	313	4	4	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0008	313	3	0	0	0	0	3	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0009	313	2	0	0	2	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0010	313	2	0	0	0	2	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0011	313	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0012	309	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0013	313	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0014	313	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0015	313	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	a0016	313	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H2_chr3_98277505_98289070	0/0	a0001	309	197	47	21	115	3	11	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	1/0	a0002	309	161	31	38	54	14	23	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/1	a0003	309	74	17	16	35	1	4	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0004	309	2	0	1	0	0	1	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0005	309	2	2	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0006	309	1	0	1	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0007	309	1	0	1	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	a0009	309	1	0	0	0	0	1	copy fasta	OR5H2	chr3	98277505	98289070
OR5H6_chr3_98259244_98270356	0/0	a0001	309	143	3	15	115	3	7	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	1/1	a0002	309	115	11	30	55	5	12	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0003	306	92	16	25	26	10	15	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0004	309	33	15	6	8	0	4	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0005	309	11	11	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0006	309	11	9	2	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0007	309	10	9	1	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0008	309	8	8	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0009	309	6	6	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0010	309	4	4	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0011	309	2	2	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0012	309	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0013	309	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0014	309	1	0	0	1	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0015	309	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356