JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5H6_chr3_98259244_98270356	0/0	a0016	309	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0017	309	1	0	0	1	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	a0018	306	1	0	1	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5I1_chr11_55930456_55941400	1/1	a0001	314	373	74	57	193	11	36	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0002	314	35	8	4	17	3	3	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0003	314	8	4	2	0	2	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0004	314	7	0	5	0	2	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0005	314	7	7	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0006	314	2	0	0	2	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0007	314	1	0	0	0	0	1	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	a0008	314	1	1	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5J2_chr11_56171618_56182556	1/1	a0001	312	426	88	66	211	16	43	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0002	312	6	5	1	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0003	312	3	0	3	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0004	312	3	3	0	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0005	312	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	a0008	312	1	0	0	0	0	1	copy fasta	OR5J2	chr11	56171618	56182556
OR5K1_chr3_98458201_98477924	1/1	a0001	308	410	77	74	196	15	46	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0002	308	19	16	3	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0003	308	2	1	1	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0004	308	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0005	308	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0006	308	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0007	308	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0008	304	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	a0009	308	1	0	0	0	1	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K2_chr3_98492681_98503631	1/1	a0001	316	424	77	68	219	12	46	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0002	217	49	15	12	14	4	4	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0003	316	4	4	0	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0004	316	3	2	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0005	316	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0006	316	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0007	316	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0008	316	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	a0010	316	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K3_chr3_98385666_98396631	0/0	a0000	0	92	17	28	24	10	13	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	1/1	a0001	321	271	46	44	156	5	18	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0002	321	79	10	9	47	3	10	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0003	321	13	10	3	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0004	321	10	10	0	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0005	321	3	3	0	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0006	321	2	0	0	0	0	2	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0007	321	1	0	0	0	0	1	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	a0008	321	1	0	0	1	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K4_chr3_98348854_98359819	1/1	a0001	321	233	41	31	144	3	12	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0002	301	100	28	26	25	6	15	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0003	321	91	17	22	35	2	15	copy fasta	OR5K4	chr3	98348854	98359819