JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR5K4_chr3_98348854_98359819	0/0	a0004	321	5	5	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0005	321	4	4	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0006	321	4	0	2	0	1	1	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0007	321	3	0	0	3	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0008	301	3	0	0	0	0	3	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0009	321	2	2	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0010	321	2	2	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0011	235	1	0	1	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0012	321	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0013	321	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0014	321	1	1	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	a0015	321	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5L1_chr11_55806367_55817476	1/1	a0001	311	386	57	60	211	15	41	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0002	311	29	8	4	11	3	3	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0003	311	8	7	1	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0004	311	5	5	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0005	311	3	3	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0006	311	3	3	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0007	311	2	2	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0008	311	1	0	0	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0010	311	1	0	0	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	a0011	311	1	0	1	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L2_chr11_55822219_55833154	1/1	a0001	311	395	66	71	199	15	42	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0002	311	31	8	4	13	3	3	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0003	311	8	7	1	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0004	311	5	5	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0005	311	3	3	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0006	311	2	2	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0007	311	1	0	0	1	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0008	311	1	0	0	0	0	1	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5M10_chr11_56571774_56582721	0/0	a0001	315	262	32	48	153	5	24	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	1/1	a0002	315	89	38	14	26	2	7	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0003	315	64	2	8	43	3	8	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0004	315	11	10	1	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0005	151	7	1	1	0	4	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0006	315	1	0	0	0	0	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0007	315	1	0	0	0	0	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0008	315	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0009	315	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	a0010	315	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M11_chr11_56537340_56548257	0/0	a0001	305	295	35	44	171	10	35	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	1/1	a0002	305	99	52	14	22	2	7	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0003	305	18	0	0	17	0	1	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0004	125	7	1	1	0	4	1	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0005	305	3	3	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0006	305	2	1	1	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	a0007	305	2	2	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257